Since Plesk 10 gave internal server errors due to the fact that I was using atomic's PHP and MySQL packages, I removed the Atomic repo file and reinstalled all PHP and MySQL packages. Internal server errors were gone. However, I still need the zend/ioncube loaders and modsecurity and adding the atomic repo again using the automated installer doesn't add the repo file. I'm using CentOS 6 with Plesk 10.4.4.
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# wget -q -O - http://www.atomicorp.com/installers/atomic |sh
Atomic Archive installer, version 2.0.3
BY INSTALLING THIS SOFTWARE AND BY USING ANY AND ALL SOFTWARE
PROVIDED BY ATOMICORP LIMITED YOU ACKNOWLEDGE AND AGREE:
THIS SOFTWARE AND ALL SOFTWARE PROVIDED IN THIS REPOSITORY IS
PROVIDED BY ATOMICORP LIMITED AS IS, IS UNSUPPORTED AND ANY
EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL ATOMICORP LIMITED, THE
COPYRIGHT OWNER OR ANY CONTRIBUTOR TO ANY AND ALL SOFTWARE PROVIDED
BY OR PUBLISHED IN THIS REPOSITORY BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
OF THE POSSIBILITY OF SUCH DAMAGE.
Do you agree to these terms? (yes/no) [Default: yes] yes
Configuring the [atomic] yum archive for this system
Installing the Atomic GPG key: OK
The Atomic Rocket Turtle archive has now been installed and configured for your system
The following channels are available:
atomic - [ACTIVATED] - contains the stable tree of ART packages
atomic-testing - [DISABLED] - contains the testing tree of ART packages
atomic-bleeding - [DISABLED] - contains the development tree of ART packages
# lsautoinstaller-sources.repo CentOS-Debuginfo.repo
CentOS-Base.repo CentOS-Media.repo