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Problem with recent php updates in atomic repo

https://forums.atomicorp.com/viewtopic.php?t=8252

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Problem with recent php updates in atomic repo

Posted: Tue Jan 12, 2016 8:21 am
by lfenison
I just ran yum update and seem to have dependency issues. I have never been any good at working around these kind of problems and was hoping someone could tell me how to get around this.

I use mysqlnd and libmcrypt and they seem to be the issue.

Code: Select all

> yum update
Loaded plugins: fastestmirror, priorities, refresh-packagekit, security
Setting up Update Process
Loading mirror speeds from cached hostfile
 * asl-4.0: www2.atomicorp.com
 * atomic: www2.atomicorp.com
 * base: mirrors.unifiedlayer.com
 * extras: mirror.spro.net
 * tortix: www2.atomicorp.com
 * updates: mirror.fusioncloud.co
518 packages excluded due to repository priority protections
Resolving Dependencies
--> Running transaction check
---> Package php-mcrypt.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mcrypt.x86_64 0:5.4.45-52.el6.art will be an update
--> Processing Dependency: php-common(x86-64) = 5.4.45-52.el6.art for package: php-mcrypt-5.4.45-52.el6.art.x86_64
---> Package php-mysqlnd.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mysqlnd.x86_64 0:5.4.45-52.el6.art will be an update
--> Processing Dependency: php-pdo(x86-64) = 5.4.45-52.el6.art for package: php-mysqlnd-5.4.45-52.el6.art.x86_64
--> Finished Dependency Resolution
Error: Package: php-mysqlnd-5.4.45-52.el6.art.x86_64 (atomic)
           Requires: php-pdo(x86-64) = 5.4.45-52.el6.art
           Installed: php-pdo-5.4.45-51.el6.art.x86_64 (@atomic)
               php-pdo(x86-64) = 5.4.45-51.el6.art
           Available: php-pdo-5.3.3-40.el6_6.x86_64 (base)
               php-pdo(x86-64) = 5.3.3-40.el6_6
           Available: php-pdo-5.3.3-46.el6_6.x86_64 (updates)
               php-pdo(x86-64) = 5.3.3-46.el6_6
Error: Package: php-mcrypt-5.4.45-52.el6.art.x86_64 (atomic)
           Requires: php-common(x86-64) = 5.4.45-52.el6.art
           Installed: php-common-5.4.45-51.el6.art.x86_64 (@atomic)
               php-common(x86-64) = 5.4.45-51.el6.art
           Available: php-common-5.3.3-40.el6_6.x86_64 (base)
               php-common(x86-64) = 5.3.3-40.el6_6
           Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
               php-common(x86-64) = 5.3.3-46.el6_6
 You could try using --skip-broken to work around the problem
Does anyone have any clues what to do next?

Re: Problem with recent php updates in atomic repo

Posted: Tue Jan 12, 2016 11:09 pm
by scott
I think you might have hit a mirror still syncing or something. Regardless there is a -53 now that covers 2 more vulnerabilities. Make sure you clear your cache!

Re: Problem with recent php updates in atomic repo

Posted: Tue Jan 12, 2016 11:34 pm
by lfenison
scott wrote:I think you might have hit a mirror still syncing or something. Regardless there is a -53 now that covers 2 more vulnerabilities. Make sure you clear your cache!
The new version didn't help either. I had to do a --skip-broken to get it to install but the same items had the same problems.

Code: Select all

Resolving Dependencies
--> Running transaction check
---> Package php-mcrypt.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mcrypt.x86_64 0:5.4.45-53.el6.art will be an update
--> Processing Dependency: php-common(x86-64) = 5.4.45-53.el6.art for package: php-mcrypt-5.4.45-53.el6.art.x86_64
---> Package php-mysqlnd.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mysqlnd.x86_64 0:5.4.45-53.el6.art will be an update
--> Processing Dependency: php-pdo(x86-64) = 5.4.45-53.el6.art for package: php-mysqlnd-5.4.45-53.el6.art.x86_64
--> Finished Dependency Resolution
Error: Package: php-mysqlnd-5.4.45-53.el6.art.x86_64 (atomic)
           Requires: php-pdo(x86-64) = 5.4.45-53.el6.art
           Installed: php-pdo-5.4.45-51.el6.art.x86_64 (@atomic)
               php-pdo(x86-64) = 5.4.45-51.el6.art
           Available: php-pdo-5.3.3-40.el6_6.x86_64 (base)
               php-pdo(x86-64) = 5.3.3-40.el6_6
           Available: php-pdo-5.3.3-46.el6_6.x86_64 (updates)
               php-pdo(x86-64) = 5.3.3-46.el6_6
Error: Package: php-mcrypt-5.4.45-53.el6.art.x86_64 (atomic)
           Requires: php-common(x86-64) = 5.4.45-53.el6.art
           Installed: php-common-5.4.45-51.el6.art.x86_64 (@atomic)
               php-common(x86-64) = 5.4.45-51.el6.art
           Available: php-common-5.3.3-40.el6_6.x86_64 (base)
               php-common(x86-64) = 5.3.3-40.el6_6
           Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
               php-common(x86-64) = 5.3.3-46.el6_6
 You could try using --skip-broken to work around the problem

Re: Problem with recent php updates in atomic repo

Posted: Wed Jan 13, 2016 10:27 am
by scott
try adding --disableexcludes=all

Re: Problem with recent php updates in atomic repo

Posted: Wed Jan 13, 2016 2:10 pm
by lfenison
scott wrote:try adding --disableexcludes=all
Same problem. Here is the result.

Code: Select all

 > yum update --disableexcludes=all
Loaded plugins: fastestmirror, priorities, refresh-packagekit, security
Setting up Update Process
Loading mirror speeds from cached hostfile
 * asl-4.0: www2.atomicorp.com
 * atomic: www2.atomicorp.com
 * base: mirror.pac-12.org
 * extras: mirrors.kernel.org
 * tortix: www2.atomicorp.com
 * updates: mirrors.xmission.com
570 packages excluded due to repository priority protections
Resolving Dependencies
--> Running transaction check
---> Package php-mcrypt.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mcrypt.x86_64 0:5.4.45-53.el6.art will be an update
--> Processing Dependency: php-common(x86-64) = 5.4.45-53.el6.art for package: php-mcrypt-5.4.45-53.el6.art.x86_64
---> Package php-mysqlnd.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mysqlnd.x86_64 0:5.4.45-53.el6.art will be an update
--> Processing Dependency: php-pdo(x86-64) = 5.4.45-53.el6.art for package: php-mysqlnd-5.4.45-53.el6.art.x86_64
--> Finished Dependency Resolution
Error: Package: php-mysqlnd-5.4.45-53.el6.art.x86_64 (atomic)
           Requires: php-pdo(x86-64) = 5.4.45-53.el6.art
           Installed: php-pdo-5.4.45-51.el6.art.x86_64 (@atomic)
               php-pdo(x86-64) = 5.4.45-51.el6.art
           Available: php-pdo-5.3.3-40.el6_6.x86_64 (base)
               php-pdo(x86-64) = 5.3.3-40.el6_6
           Available: php-pdo-5.3.3-46.el6_6.x86_64 (updates)
               php-pdo(x86-64) = 5.3.3-46.el6_6
Error: Package: php-mcrypt-5.4.45-53.el6.art.x86_64 (atomic)
           Requires: php-common(x86-64) = 5.4.45-53.el6.art
           Installed: php-common-5.4.45-51.el6.art.x86_64 (@atomic)
               php-common(x86-64) = 5.4.45-51.el6.art
           Available: php-common-5.3.3-40.el6_6.x86_64 (base)
               php-common(x86-64) = 5.3.3-40.el6_6
           Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
               php-common(x86-64) = 5.3.3-46.el6_6
 You could try using --skip-broken to work around the problem
 You could try running: rpm -Va --nofiles --nodigest

Re: Problem with recent php updates in atomic repo

Posted: Wed Jan 13, 2016 4:18 pm
by biggles
I'm having the same problem.

3.2.69-81.art.x86_64 #1 SMP Wed Jul 15 23:07:24 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux

Atomic Secured Linux, version 4.0.17-34.el6.art: CentOS 6 (SUPPORTED)
CentOS 6 (SUPPORTED)
Copyright Atomicorp 2015
All Rights Reserved.

Extended Version Information:

ASL_VERSION 4.0.17-33
APPINV_VERSION 201502271124
CLAMAV_VERSION 201601111245
GEOMAP_VERSION 201601111223
GRSEC_VERSION 0
MODSEC_VERSION 201601121731
OSSEC_VERSION 201601071733
WAF_DELAYED_VERSION 0
KERNEL_VERSION 0

Re: Problem with recent php updates in atomic repo

Posted: Fri Jan 15, 2016 4:37 pm
by lfenison
We are both running the same version of CentOS. I am running on 3 systems with the same OS version and only one of the three systems has the problem.

Linux zeus.deltatechnicalservices.com 3.2.68-77.art.x86_64 #1 SMP Fri Apr 24 11:36:07 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux


Atomic Secured Linux, version 4.0.17-34.el6.art: CentOS 6 (SUPPORTED)
CentOS 6 (SUPPORTED)
Copyright Atomicorp 2015
All Rights Reserved.

Extended Version Information:

ASL_VERSION 4.0.17-33
APPINV_VERSION 201502271124
CLAMAV_VERSION 201601141535
GEOMAP_VERSION 201601141313
GRSEC_VERSION 0
MODSEC_VERSION 201601141536
OSSEC_VERSION 201601151410
WAF_DELAYED_VERSION 0
KERNEL_VERSION 0

Re: Problem with recent php updates in atomic repo

Posted: Sun Jan 24, 2016 5:00 pm
by lfenison
scott wrote:try adding --disableexcludes=all
No luck with this.. Still won't install. Any ideas?

Code: Select all

 yum update --disableexcludes=all
Loaded plugins: fastestmirror, priorities, refresh-packagekit, security
Setting up Update Process
Loading mirror speeds from cached hostfile
 * asl-4.0: www3.atomicorp.com
 * atomic: www3.atomicorp.com
 * base: mirror.spro.net
 * extras: mirror.tocici.com
 * tortix: www3.atomicorp.com
 * updates: mirror.supremebytes.com
570 packages excluded due to repository priority protections
Resolving Dependencies
--> Running transaction check
---> Package php-mcrypt.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mcrypt.x86_64 0:5.4.45-53.el6.art will be an update
--> Processing Dependency: php-common(x86-64) = 5.4.45-53.el6.art for package: php-mcrypt-5.4.45-53.el6.art.x86_64
---> Package php-mysqlnd.x86_64 0:5.4.45-51.el6.art will be updated
---> Package php-mysqlnd.x86_64 0:5.4.45-53.el6.art will be an update
--> Processing Dependency: php-pdo(x86-64) = 5.4.45-53.el6.art for package: php-mysqlnd-5.4.45-53.el6.art.x86_64
--> Finished Dependency Resolution
Error: Package: php-mysqlnd-5.4.45-53.el6.art.x86_64 (atomic)
           Requires: php-pdo(x86-64) = 5.4.45-53.el6.art
           Installed: php-pdo-5.4.45-51.el6.art.x86_64 (@atomic)
               php-pdo(x86-64) = 5.4.45-51.el6.art
           Available: php-pdo-5.3.3-40.el6_6.x86_64 (base)
               php-pdo(x86-64) = 5.3.3-40.el6_6
           Available: php-pdo-5.3.3-46.el6_6.x86_64 (updates)
               php-pdo(x86-64) = 5.3.3-46.el6_6
Error: Package: php-mcrypt-5.4.45-53.el6.art.x86_64 (atomic)
           Requires: php-common(x86-64) = 5.4.45-53.el6.art
           Installed: php-common-5.4.45-51.el6.art.x86_64 (@atomic)
               php-common(x86-64) = 5.4.45-51.el6.art
           Available: php-common-5.3.3-40.el6_6.x86_64 (base)
               php-common(x86-64) = 5.3.3-40.el6_6
           Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
               php-common(x86-64) = 5.3.3-46.el6_6
 You could try using --skip-broken to work around the problem
 You could try running: rpm -Va --nofiles --nodigest
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