From the Parallels forums, a couple of issues seem to have cropped up which Igor indicates are due to prefix conflicts between some Plesk and Atomic rpms, I think. I don't know the mechanics, but this is worth keeping in mind if upgrading to Plesk 11 with php from the atomic repo installed:
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ERROR: Unable to proceed with the installation until the package php-ioncube-loader-1:4.0.10-1.el5.art.i386 is removed from the system.
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Error: Can't find solution for 'obsolete_mode_solution for php-sqlite' of dummy_masterpackage_for_dependency-1.2.3.
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