Problem updating MySQL on my FC3/Plesk 7.5 box

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hansdezwart
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Problem updating MySQL on my FC3/Plesk 7.5 box

Unread post by hansdezwart »

I am trying to get MySQL to a version higher than 4.16. Currently it is at 3.23.

The operating system is Fedora Core 3 with a Plesk 7.5 installation on top of it.

I have the following yum.conf file:

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# THIS CHANNEL CONTAINS MY PSA COMPATIBLE RPMS (php, mysql, qmail-scanner, etc)
[atomic]
name=Atomic Rocket Turtle - $releasever - Atomic PSA-Compatible RPMS
baseurl=http://3es.atomicrocketturtle.com/atomic/art/$releasever/
gpgcheck=0

[atomic-app-vault]
name=Atomic Rocket Turtle - $releasever - Atomic PSA App Vault RPMS
baseurl=http://3es.atomicrocketturtle.com/atomic/app-vault/
gpgcheck=0

[psa-7.5]
name=Atomic Rocket Turtle - $releasever - SW-Soft PSA 7.5 RPMS
baseurl=http://3es.atomicrocketturtle.com/atomic/psa-7.5/$releasever/
gpgcheck=0

# Update mirrors for Fedora, Fedoralegacy, and CentOS 3/4
[base]
name=Atomic Rocket Turtle - $releasever - Base OS RPMS mirror
baseurl=http://3es.atomicrocketturtle.com/3rd-party/base/$releasever/
gpgcheck=0

[updates]
name=Atomic Rocket Turtle - $releasever - OS Update RPMS mirror
baseurl=http://3es.atomicrocketturtle.com/3rd-party/updates/$releasever/
gpgcheck=0
When I run

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yum install mysql 
as root I get the following output:

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Repository base already added, not adding again
Setting up Install Process
Setting up Repo:  psa-7.5
repomd.xml                100% |=========================|  951 B    00:00
Setting up Repo:  base
repomd.xml                100% |=========================|  951 B    00:00
Setting up Repo:  atomic
repomd.xml                100% |=========================|  951 B    00:00
Setting up Repo:  updates-released
repomd.xml                100% |=========================|  951 B    00:00
Setting up Repo:  atomic-app-vault
repomd.xml                100% |=========================|  951 B    00:00
Setting up Repo:  updates
repomd.xml                100% |=========================|  951 B    00:00
Reading repository metadata in from local files
psa-7.5   : ################################################## 133/133
primary.xml.gz            100% |=========================| 566 kB    00:01
MD Read   : ################################################## 1652/1652
base      : ################################################## 1652/1652
atomic    : ################################################## 196/196
updates-re: ################################################## 910/910
atomic-app: ################################################## 6/6
primary.xml.gz            100% |=========================| 316 kB    00:00
MD Read   : ################################################## 780/780
updates   : ################################################## 780/780
Reading repository metadata in from local files
Resolving Dependencies
--> Populating transaction set with selected packages. Please wait.
---> Package mysql.i386 0:4.1.20-1.art.rhfc3.art set to be updated
--> Running transaction check
--> Processing Dependency: libmysqlclient.so.10 for package: perl-DBD-MySQL
--> Processing Dependency: mysql= 3.23.58 for package: mysql-server
--> Processing Dependency: libmysqlclient.so.10 for package: sitebuilder-core
--> Processing Dependency: libmysqlclient.so.10 for package: mysql-server
--> Processing Dependency: libmysqlclient.so.10 for package: php-mysql
--> Restarting Dependency Resolution with new changes.
--> Populating transaction set with selected packages. Please wait.
---> Package mysql.i386 0:3.23.58-16.FC3.1 set to be updated
---> Package mysql-server.i386 0:4.1.20-1.art.rhfc3.art set to be updated
---> Package sitebuilder-core.i386 0:1.0-fc3.build051222.05 set to be updated
---> Package php-mysql.i386 0:4.4.2-3.rhfc3.art set to be updated
--> Running transaction check
--> Processing Dependency: php= 4.4.2-3.rhfc3.art for package: php-mysql
--> Restarting Dependency Resolution with new changes.
--> Populating transaction set with selected packages. Please wait.
---> Package php.i386 0:4.4.2-3.rhfc3.art set to be updated
--> Running transaction check
--> Processing Dependency: php= 4.3.9-3 for package: php-ldap
--> Processing Dependency: php= 4.3.9-3 for package: php-pear
--> Processing Dependency: php= 4.3.9-3 for package: php-domxml
--> Processing Dependency: php= 4.3.9-3 for package: php-pgsql
--> Processing Dependency: php-mbstring= 4.4.2-3.rhfc3.art for package: php
--> Processing Dependency: php= 4.3.9-3 for package: php-imap
--> Restarting Dependency Resolution with new changes.
--> Populating transaction set with selected packages. Please wait.
---> Package php-ldap.i386 0:4.4.2-3.rhfc3.art set to be updated
---> Package php-pear.i386 0:4.4.2-3.rhfc3.art set to be updated
---> Package php-domxml.i386 0:4.4.2-3.rhfc3.art set to be updated
---> Package php-pgsql.i386 0:4.4.2-3.rhfc3.art set to be updated
---> Package php-mbstring.i386 0:4.4.2-3.rhfc3.art set to be installed
---> Package php-imap.i386 0:4.4.2-3.rhfc3.art set to be updated
--> Running transaction check

Dependencies Resolved
Transaction Listing:
  Update: mysql.i386 0:4.1.20-1.art.rhfc3.art

Performing the following to resolve dependencies:
  Install: php-mbstring.i386 0:4.4.2-3.rhfc3.art
  Update: mysql.i386 0:3.23.58-16.FC3.1
  Update: mysql-server.i386 0:4.1.20-1.art.rhfc3.art
  Update: php.i386 0:4.4.2-3.rhfc3.art
  Update: php-domxml.i386 0:4.4.2-3.rhfc3.art
  Update: php-imap.i386 0:4.4.2-3.rhfc3.art
  Update: php-ldap.i386 0:4.4.2-3.rhfc3.art
  Update: php-mysql.i386 0:4.4.2-3.rhfc3.art
  Update: php-pear.i386 0:4.4.2-3.rhfc3.art
  Update: php-pgsql.i386 0:4.4.2-3.rhfc3.art
  Update: sitebuilder-core.i386 0:1.0-fc3.build051222.05
Is this ok [y/N]:
I say it is okay and then I get the following output:

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Downloading Packages:
warning: rpmts_HdrFromFdno: V3 DSA signature: NOKEY, key ID 4f2a6fd2
public key not available for ///var/cache/yum/updates-released/packages/mysql-3.23.58-16.FC3.1.i386.rpm
Can somebody please help me? I have installed the GPG key so that should not be the problem.
scott
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Unread post by scott »

you need the fedoralegacy.org GPG key
hansdezwart
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Unread post by hansdezwart »

I have done:

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rpm --import http://www.fedoralegacy.org/FEDORA-LEGACY-GPG-KEY
That seems to work fine. I get no errors, just the prompt back.

The problem however stays identical!
scott
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Unread post by scott »

you might need the fedora key then (have you ever updated the box?), which is in /usr/share/doc/fedora-release-3/
scott
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Unread post by scott »

you might need the fedora key then (have you ever updated the box?), which is in /usr/share/doc/fedora-release-3/
hansdezwart
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Posts: 13
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Unread post by hansdezwart »

That seems to have helped. However now I get:

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Downloading Packages:
Running Transaction Test
Finished Transaction Test
Transaction Check Error:   file /usr/bin/mysql conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysql_config conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysql_find_rows conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysqlaccess conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysqlbinlog conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysqlcheck conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysqldump conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysqldumpslow conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysqlimport conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/mysqlshow conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/lib/mysql/mysql_config conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/lib/mysql/mysqlbug conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/info/mysql.info.gz conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/man/man1/mysql.1.gz conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/man/man1/mysqlaccess.1.gz conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/man/man1/mysqladmin.1.gz conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/man/man1/mysqldump.1.gz conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/man/man1/mysqlshow.1.gz conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/czech/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/czech/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/danish/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/danish/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/dutch/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/dutch/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/english/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/english/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/estonian/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/estonian/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/french/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/french/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/german/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/german/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/greek/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/greek/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/hungarian/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/hungarian/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/italian/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/italian/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/japanese/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/japanese/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/korean/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/korean/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/norwegian-ny/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/norwegian-ny/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/norwegian/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/norwegian/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/polish/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/polish/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/portuguese/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/portuguese/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/romanian/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/romanian/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/russian/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/russian/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/slovak/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/slovak/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/spanish/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/spanish/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/swedish/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/swedish/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/ukrainian/errmsg.sys conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/share/mysql/ukrainian/errmsg.txt conflicts between attempted installs of mysql-3.23.58-16.FC3.1 and mysql-4.1.20-1.art.rhfc3.art
  file /usr/bin/isamchk conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/isamlog conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/my_print_defaults conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/myisamchk conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/myisamlog conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/myisampack conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysql_fix_privilege_tables conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysql_install_db conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysql_setpermission conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysql_zap conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysqlbug conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysqld_multi conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysqlhotcopy conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/mysqltest conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/pack_isam conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/perror conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/replace conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/resolve_stack_dump conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/bin/resolveip conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/isamchk.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/isamlog.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/mysql_zap.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/mysqld.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/mysqld_multi.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/perror.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/replace.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
  file /usr/share/man/man1/safe_mysqld.1.gz conflicts between attempted installs of mysql-server-4.1.20-1.art.rhfc3.art and mysql-3.23.58-16.FC3.1
scott
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Unread post by scott »

you got that from "yum update"?
hansdezwart
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Unread post by hansdezwart »

I got it from:

Code: Select all

yum update mysql
and then a yes
breun
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Unread post by breun »

Seems like you have multiple (partial) mysql installs. What does rpm -qa | grep -i mysql say?
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hansdezwart
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Unread post by hansdezwart »

When I run that command, I get the following:

Code: Select all

rpm -qa | grep -i mysql
perl-DBD-MySQL-2.9003-5
mysql-server-3.23.58-13
mysql-3.23.58-13
php-mysql-4.3.9-3
Thank you very much for putting so much effort in helping me by the way!
hansdezwart
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Still stumped

Unread post by hansdezwart »

I have still not managed to resolve this issue. I am not sure what to do. Should I reinstall the operating system (which if fairly easy) and try again?
stevenb
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Unread post by stevenb »

Did you solve this as i have the same problem now as well on a clean install.
hansdezwart
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MySQL and Plesk problem still not solved

Unread post by hansdezwart »

I am affraid to say I have not solved the problem...

I will try again in the middle of August, unless anybody else has an idea? :idea:
scott
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Unread post by scott »

That shouldn't happen, I suspect something is seriously wrong with your box. RPM db corruption, something you've done to a config, etc. What thats saying is that the updated rpm, and the already installed rpm, are not the same package, which shouldn't happen, since they are using the same name. If you need more assistance, we do commercial support, contact support@atomicorp.com
stevenb
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Unread post by stevenb »

I solved it by reinstalling the OS there must have been some problem somewhere as it was a brandnew box only hours old and that was the first thing i tried to install.

It is a fedora 3 core with Plesk which i know can cause some problems. But an OS reinstall solved it.
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